ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR2111
source: miRBase, original name: bna-MIR2111b (MI0011287)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATCTGCATCCTGAGGTTTA miRNA* ATCCTCGGGATACAGATTACC mismatches: 2 bulges: 0 |
pre-miRNA
GCACTTGATGAGGAACTGGTAATCTGCATCCTGAGGTTTAAAAATACATAGGCACATGCAAATGTGTGTATTATAGTTTTTAATCCTCGGGATACAGATT
ACCTCTTCCTTTTACTGAA
dot-bracket secondary structure
.........((((((..(((((((((.(((((((((.((((((((..(((.((((((....)))))).)))....)))))))).))))))))).))))))
)))..))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR, Plant Physiol. 150:1541-1555(2009)., "Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing"
GCACTTGATGAGGAACTGGTAATCTGCATCCTGAGGTTTAAAAATACATAGGCACATGCAAATGTGTGTATTATAGTTTTTAATCCTCGGGATACAGATT
ACCTCTTCCTTTTACTGAA
dot-bracket secondary structure
.........((((((..(((((((((.(((((((((.((((((((..(((.((((((....)))))).)))....)))))))).))))))))).))))))
)))..))))))........
SIMILARITIES| miRBase bra-MIR2111b: 2e-21 PMRD bna-miR2111b: 3e-63 microPC no hits | UniProt no hits RFAM no hits |
Identical with: bna-miR2111b from PMRD (MNEST048382) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR, Plant Physiol. 150:1541-1555(2009)., "Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing"
