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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040303
species: Brassica napus
miRNA family: MIR2111
source: miRBase, original name: bna-MIR2111b (MI0011287)

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAATCTGCATCCTGAGGTTTA

miRNA*
 ATCCTCGGGATACAGATTACC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 GCACTTGATGAGGAACTGGTAATCTGCATCCTGAGGTTTAAAAATACATAGGCACATGCAAATGTGTGTATTATAGTTTTTAATCCTCGGGATACAGATT
ACCTCTTCCTTTTACTGAA

dot-bracket secondary structure
.........((((((..(((((((((.(((((((((.((((((((..(((.((((((....)))))).)))....)))))))).))))))))).))))))
)))..))))))........


SIMILARITIES
miRBase bra-MIR2111b: 2e-21

PMRD bna-miR2111b: 3e-63

microPC no hits		UniProt no hits

RFAM no hits

Identical with: bna-miR2111b from PMRD (MNEST048382)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR, Plant Physiol. 150:1541-1555(2009)., "Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing"



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