ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR319
source: miRBase, original name: rco-MIR319d (MI0013409)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCTT miRNA* GGAGCTCCTTTCAGTCCAATA mismatches: 0 bulges: 0 |
pre-miRNA
CCAAAGGAGCTCCTTTCAGTCCAATATGGAGGGCTTAGAAGCGGCAAAGAGCTGCCATCTCATGCATTAAGGCAATACTTGACAAGTTTTTCACAGTGAA
AATCTCAAGTTTGGCCTGGTGCATGGTGTGGGAGCAACTCCTTCCCTCCTTCCCCCACCCATTGGACTGAAGGGAGCTCCTTCTTTC
dot-bracket secondary structure
...((((((((((((((((((((((.(((.(((...((.((.((.((.(((((.((((..(((((((((.(((...((((((.....(((((.....)))
))..))))))...))))))))))))..)))).)))...)).)))))).)).))))))...)))))))))))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CCAAAGGAGCTCCTTTCAGTCCAATATGGAGGGCTTAGAAGCGGCAAAGAGCTGCCATCTCATGCATTAAGGCAATACTTGACAAGTTTTTCACAGTGAA
AATCTCAAGTTTGGCCTGGTGCATGGTGTGGGAGCAACTCCTTCCCTCCTTCCCCCACCCATTGGACTGAAGGGAGCTCCTTCTTTC
dot-bracket secondary structure
...((((((((((((((((((((((.(((.(((...((.((.((.((.(((((.((((..(((((((((.(((...((((((.....(((((.....)))
))..))))))...))))))))))))..)))).)))...)).)))))).)).))))))...)))))))))))))))))))))).....
SIMILARITIES| miRBase ptc-MIR319h: 7e-16 PMRD ptc-miRf10576-akr: 7e-16 microPC miR319: 0.0001 | UniProt no hits RFAM MIR159: 2e-102 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
