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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST040370
species: Ricinus communis
miRNA family: MIR319
source: miRBase, original name: rco-MIR319d (MI0013409)

Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGACTGAAGGGAGCTCCTT

miRNA*
 GGAGCTCCTTTCAGTCCAATA

mismatches: 0
bulges: 0
View larger
pre-miRNA
 CCAAAGGAGCTCCTTTCAGTCCAATATGGAGGGCTTAGAAGCGGCAAAGAGCTGCCATCTCATGCATTAAGGCAATACTTGACAAGTTTTTCACAGTGAA
AATCTCAAGTTTGGCCTGGTGCATGGTGTGGGAGCAACTCCTTCCCTCCTTCCCCCACCCATTGGACTGAAGGGAGCTCCTTCTTTC

dot-bracket secondary structure
...((((((((((((((((((((((.(((.(((...((.((.((.((.(((((.((((..(((((((((.(((...((((((.....(((((.....)))
))..))))))...))))))))))))..)))).)))...)).)))))).)).))))))...)))))))))))))))))))))).....


SIMILARITIES
miRBase ptc-MIR319h: 7e-16

PMRD ptc-miRf10576-akr: 7e-16

microPC miR319: 0.0001		UniProt no hits

RFAM MIR159: 2e-102

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR

references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"



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