ABOUT THIS RECORDspecies: Arachis hypogaea
miRNA family: MIR398
source: miRBase, original name: ahy-MIR398 (MI0015339)
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GAGTGAACCTGAGAACACAAA mismatches: 1 bulges: 1 |
pre-miRNA
TATCTCAGAGGAGTGAACCTGAGAACACAAAGTAAATTGTTTCGGAGTTTGGAATGCCATAATCACATGCATAATGCATTTATGCTTATGCTTGTATATG
GTACATATTTTCGAATTTTAATTTACCTTGTGTTCTCAGGTCACCCCTTTGAG
dot-bracket secondary structure
...((((((((.((((.(((((((((((((.((((((((.(((((((..((...(((((((...(((.((((((.(((....))))))))).))).))))
)))))...)))))))...)))))))).))))))))))))))))).))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
TATCTCAGAGGAGTGAACCTGAGAACACAAAGTAAATTGTTTCGGAGTTTGGAATGCCATAATCACATGCATAATGCATTTATGCTTATGCTTGTATATG
GTACATATTTTCGAATTTTAATTTACCTTGTGTTCTCAGGTCACCCCTTTGAG
dot-bracket secondary structure
...((((((((.((((.(((((((((((((.((((((((.(((((((..((...(((((((...(((.((((((.(((....))))))))).))).))))
)))))...)))))))...)))))))).))))))))))))))))).))))))))
SIMILARITIES| miRBase gma-MIR398b: 0.0000000005 PMRD gma-miR398b: 0.0000000005 microPC miR398: 0.0000001 | UniProt no hits RFAM MIR398: 0.000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
