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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040403
species: Arachis hypogaea
miRNA family: MIR398
source: miRBase, original name: ahy-MIR398 (MI0015339)

Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGAACCTGAGAACACAAA

mismatches: 1
bulges: 1
View larger
pre-miRNA
 TATCTCAGAGGAGTGAACCTGAGAACACAAAGTAAATTGTTTCGGAGTTTGGAATGCCATAATCACATGCATAATGCATTTATGCTTATGCTTGTATATG
GTACATATTTTCGAATTTTAATTTACCTTGTGTTCTCAGGTCACCCCTTTGAG

dot-bracket secondary structure
...((((((((.((((.(((((((((((((.((((((((.(((((((..((...(((((((...(((.((((((.(((....))))))))).))).))))
)))))...)))))))...)))))))).))))))))))))))))).))))))))


SIMILARITIES
miRBase gma-MIR398b: 0.0000000005

PMRD gma-miR398b: 0.0000000005

microPC miR398: 0.0000001		UniProt no hits

RFAM MIR398: 0.000000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"



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