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ABOUT THIS RECORD

ID: MNEST040434
species: Glycine max
miRNA family: MIR159
source: miRBase, original name: gma-MIR159c (MI0007207)

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTGGAGTGAAGGGAGCTCCG

miRNA*
 GAGCTCTCTACACTCCAAGTC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 ACCCAAGTTGGAGCTCTCTACACTCCAAGTCTGAAGGAAGTGACGGTAGACCCTTGCTGCTAATTCATGGTTACCTTTGGATTCAGATAAGGAAGCATGT
GAAAGTCATGGGTCTGCATGAATTTGAAGACGGGGCTACCTTGATCTTTTAGTATTGGAGTGAAGGGAGCTCCGAATTAGGCCTT

dot-bracket secondary structure
.((.((.((((((((((((.((((((((..((((((((..(((.(((((.((((..((...((((((((...((((.(((.((((.((........)).)
)))..))).))))...))))))))...))..)))))))))))).))))))))..)))))))).)))))))))))).)).))....


SIMILARITIES
miRBase gma-MIR159b: 0.00000000001

PMRD gma-miR159c: 2e-102

microPC miR159: 1e-45		UniProt no hits

RFAM MIR159: 0.0002

Identical with: gma-miR159c from PMRD (MNEST048541)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern

references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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