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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040434
species: Glycine max
miRNA family: MIR159
source: miRBase, original name: gma-MIR159c (MI0007207)

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTGGAGTGAAGGGAGCTCCG

miRNA*
 GAGCTCTCTACACTCCAAGTC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 ACCCAAGTTGGAGCTCTCTACACTCCAAGTCTGAAGGAAGTGACGGTAGACCCTTGCTGCTAATTCATGGTTACCTTTGGATTCAGATAAGGAAGCATGT
GAAAGTCATGGGTCTGCATGAATTTGAAGACGGGGCTACCTTGATCTTTTAGTATTGGAGTGAAGGGAGCTCCGAATTAGGCCTT

dot-bracket secondary structure
.((.((.((((((((((((.((((((((..((((((((..(((.(((((.((((..((...((((((((...((((.(((.((((.((........)).)
)))..))).))))...))))))))...))..)))))))))))).))))))))..)))))))).)))))))))))).)).))....


SIMILARITIES
miRBase gma-MIR159b: 0.00000000001

PMRD gma-miR159c: 2e-102

microPC miR159: 1e-45		UniProt no hits

RFAM MIR159: 0.0002

Identical with: gma-miR159c from PMRD (MNEST048541)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern

references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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