ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR398
source: miRBase, original name: gma-MIR398a (MI0001787)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGAGTGAATCTGAGAACACAAG mismatches: 1 bulges: 1 |
pre-miRNA
CTCGGAGGAGTGAATCTGAGAACACAAGGCTGGTTTGCACTGCTATATCATCTATTGGTATAAGGTGAATTTACTTTGTGTTCTCAGGTCACCCCTTTGA
GCCAACCTGTTGACAT
dot-bracket secondary structure
((((((((.((((.(((((((((((((((..((((..(.((..(((((((.....))))))))))..))))..))))))))))))))))))).)))))))
)...............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CTCGGAGGAGTGAATCTGAGAACACAAGGCTGGTTTGCACTGCTATATCATCTATTGGTATAAGGTGAATTTACTTTGTGTTCTCAGGTCACCCCTTTGA
GCCAACCTGTTGACAT
dot-bracket secondary structure
((((((((.((((.(((((((((((((((..((((..(.((..(((((((.....))))))))))..))))..))))))))))))))))))).)))))))
)...............
SIMILARITIES| miRBase gma-MIR398b: 2e-45 PMRD gma-miR398a: 2e-61 microPC miR398: 4e-47 | UniProt no hits RFAM MIR398: 0.00000003 |
Identical with: gma-miR398a from PMRD (MNEST048581) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
