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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST040478
species:
Glycine max
miRNA family:
MIR398
source:
miRBase, original name:
gma-MIR398a
(
MI0001787
)
Taxonomy by NCBI:
Glycine max
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCACCCCTT
miRNA*
GGAGTGAATCTGAGAACACAAG
mismatches:
1
bulges:
1
View larger
pre-miRNA
CTCGGA
GGAGTGAATCTGAGAACACAAG
GCTGGTTTGCACTGCTATATCATCTATTGGTATAAGGTGAATTTACTT
TGTGTTCTCAGGTCACCCCTT
TGA
GCCAACCTGTTGACAT
dot-bracket secondary structure
((((((
((.((((.((((((((((((((
(..((((..(.((..(((((((.....))))))))))..))))..)))
)))))))))))))))).))))
)))
)...............
SIMILARITIES
miRBase
gma-MIR398b
:
2e-45
PMRD
gma-miR398a
:
2e-61
microPC
miR398
:
4e-47
UniProt
no hits
RFAM
MIR398: 0.00000003
Identical with:
gma-miR398a
from PMRD (
MNEST048581
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"