ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR398
source: miRBase, original name: gma-MIR398b (MI0001788)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGAGTGGATCTGAGAACACAAG mismatches: 1 bulges: 1 |
pre-miRNA
AGTCCAAATGGTTTATCTCAGAGGAGTGGATCTGAGAACACAAGGCTGGTTTGCACTGCTATATTATGATCGATTGGTATAAGGTGAATTTACTTTGTGT
TCTCAGGTCACCCCTTTGAGCCAACCTGTTGACAT
dot-bracket secondary structure
.(((.....((((...((((((((.(((.((((((((((((((((..((((..(.((..(((((((........))))))))))..))))..))))))))
))))))))))).))))))))..))))....)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGTCCAAATGGTTTATCTCAGAGGAGTGGATCTGAGAACACAAGGCTGGTTTGCACTGCTATATTATGATCGATTGGTATAAGGTGAATTTACTTTGTGT
TCTCAGGTCACCCCTTTGAGCCAACCTGTTGACAT
dot-bracket secondary structure
.(((.....((((...((((((((.(((.((((((((((((((((..((((..(.((..(((((((........))))))))))..))))..))))))))
))))))))))).))))))))..))))....)))..
SIMILARITIES| miRBase gma-MIR398a: 3e-45 PMRD gma-miR398b: 1e-72 microPC miR398: 3e-48 | UniProt no hits RFAM MIR398: 0.00000003 |
Identical with: gma-miR398b from PMRD (MNEST048582) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
