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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040479
species: Glycine max
miRNA family: MIR398
source: miRBase, original name: gma-MIR398b (MI0001788)

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCTT

miRNA*
 GGAGTGGATCTGAGAACACAAG

mismatches: 1
bulges: 1
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pre-miRNA
 AGTCCAAATGGTTTATCTCAGAGGAGTGGATCTGAGAACACAAGGCTGGTTTGCACTGCTATATTATGATCGATTGGTATAAGGTGAATTTACTTTGTGT
TCTCAGGTCACCCCTTTGAGCCAACCTGTTGACAT

dot-bracket secondary structure
.(((.....((((...((((((((.(((.((((((((((((((((..((((..(.((..(((((((........))))))))))..))))..))))))))
))))))))))).))))))))..))))....)))..


SIMILARITIES
miRBase gma-MIR398a: 3e-45

PMRD gma-miR398b: 1e-72

microPC miR398: 3e-48		UniProt no hits

RFAM MIR398: 0.00000003

Identical with: gma-miR398b from PMRD (MNEST048582)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



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