ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR393
source: miRBase, original name: mtr-MIR393 (MI0001745)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCATGCCATCCCTTTGGATT mismatches: 1 bulges: 1 |
pre-miRNA
AACTGCAACTTGAGGAGGCATCCAAAGGGATCGCATTGATCCTATAATATTTCAACTTTAGTCACTTTAATTTTCTCTCATATAATACTTAATTGGGATC
ATGCCATCCCTTTGGATTTCTCCTTTAGTAGCTAC
dot-bracket secondary structure
....((.(((.(((((((.((((((((((((.((((.(((((((.................................................)))))))
)))).)))))))))))).))))))).))).))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Northern
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
AACTGCAACTTGAGGAGGCATCCAAAGGGATCGCATTGATCCTATAATATTTCAACTTTAGTCACTTTAATTTTCTCTCATATAATACTTAATTGGGATC
ATGCCATCCCTTTGGATTTCTCCTTTAGTAGCTAC
dot-bracket secondary structure
....((.(((.(((((((.((((((((((((.((((.(((((((.................................................)))))))
)))).)))))))))))).))))))).))).))...
SIMILARITIES| miRBase tcc-MIR393a: 0.00000000003 PMRD mtr-miR393: 1e-72 microPC miR393: 0.000007 | UniProt no hits RFAM no hits |
Identical with: mtr-miR393 from PMRD (MNEST048730) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Northern
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
