ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR159
source: miRBase, original name: pvu-MIR159a (MI0010700)
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCCATATCTGGGGAGCTTC miRNA* AGCTGCTTAGCTATGGATCCC mismatches: 5 bulges: 0 |
pre-miRNA
GTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGGATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCAGCATGTTTTGTGGTAGTC
TTGTGGCTTCCATATCTGGGGAGCTTCATCTGCCTCTATAGTATCATCCTTCTTTGGATTGAAGGGAGCTCTAC
dot-bracket secondary structure
((((((((((((..(((((((..((((((..(((((((..(((.(((((.(((((.((((((..((((((..(((((((...........)).)))))..
))))))..)))))).))))).))))).)))..)))....))))..))))))..)))))))..))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
GTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGGATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATCAGCATGTTTTGTGGTAGTC
TTGTGGCTTCCATATCTGGGGAGCTTCATCTGCCTCTATAGTATCATCCTTCTTTGGATTGAAGGGAGCTCTAC
dot-bracket secondary structure
((((((((((((..(((((((..((((((..(((((((..(((.(((((.(((((.((((((..((((((..(((((((...........)).)))))..
))))))..)))))).))))).))))).)))..)))....))))..))))))..)))))))..))))))))))))
SIMILARITIES| miRBase pvu-MIR159a: 7e-96 PMRD pvu-miR159: 7e-96 microPC miR159: 5e-69 | UniProt no hits RFAM MIR159: 1e-20 |
Identical with: pvu-miR159 from PMRD (MNEST054378) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"
