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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Cucumis melo subsp. melo
,
Euonymus alatus
,
Euphorbia esula
,
Fagus sylvatica
,
Fragaria vesca
,
Fragaria x ananassa
,
Glycine soja
,
Glycyrrhiza uralensis
,
Hevea brasiliensis
,
Humulus lupulus
,
Jatropha curcas
,
Juglans hindsii x Juglans regia
,
Linum usitatissimum
,
Lotus japonicus
,
Manihot esculenta
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Prunus armeniaca
,
Prunus persica
,
Quercus petraea
,
Quercus robur
,
Trifolium pratense
,
Bruguiera gymnorhiza
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Populus trichocarpa
,
Phaseolus vulgaris
,
Ricinus communis
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST041023
species:
Phaseolus vulgaris
miRNA family:
MIR159
source:
miRBase, original name:
pvu-MIR159a
(
MI0010700
)
Taxonomy by NCBI:
Phaseolus vulgaris
Phaseolus
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTTCCATATCTGGGGAGCTTC
miRNA*
AGCTGCTTAGCTATGGATCCC
mismatches:
5
bulges:
0
View larger
pre-miRNA
GTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGGATTG
AGCTGCTTAGCTATGGATCCC
ACAGTTCTACCCATCAGCATGTTTTGTGGTAGTC
TTGTGG
CTTCCATATCTGGGGAGCTTC
ATCTGCCTCTATAGTATCATCCTTCTTTGGATTGAAGGGAGCTCTAC
dot-bracket secondary structure
((((((((((((..(((((((..((((((..(((((((..(((.(
((((.(((((.((((((..((
((((..(((((((...........)).)))))..
))))))
..)))))).))))).))))).
)))..)))....))))..))))))..)))))))..))))))))))))
SIMILARITIES
miRBase
pvu-MIR159a
:
7e-96
PMRD
pvu-miR159
:
7e-96
microPC
miR159
:
5e-69
UniProt
no hits
RFAM
MIR159: 1e-20
Identical with:
pvu-miR159
from PMRD (
MNEST054378
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL,
Plant Mol Biol. 70:385-401(2009).
,
"Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"