miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST041028
species:
Phaseolus vulgaris
miRNA family:
MIR482
source:
miRBase, original name:
pvu-MIR482
(
MI0010702
)
Taxonomy by NCBI:
Phaseolus vulgaris
Phaseolus
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTTCCCAATTCCGCCCATTCC
miRNA*
AATGGGCTGATTGGGAAGCAA
mismatches:
2
bulges:
1
View larger
pre-miRNA
GGGATCCGGAGATTGGAGCAATCAGAATTTGTGGG
AATGGGCTGATTGGGAAGCAA
TGTGTGCTGGTGCAATGCATTTAATT
TCTTCCCAATTCCGCCCA
TTCC
TATGATCTCTGATGATTCTTTCCTTTCCT
dot-bracket secondary structure
((((...((((...((((..((((((..(..((((
(((((((.((((((((((.((
(..((((.........))))...)))
.))))))))))..)))))
))))
))..)..))))))..))))))))..))))
SIMILARITIES
miRBase
gma-MIR482a
:
2e-46
PMRD
pvu-miR482
:
1e-71
microPC
miR482
:
6e-37
UniProt
no hits
RFAM
no hits
Identical with:
pvu-miR482
from PMRD (
MNEST054383
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned, Northern
references
[
1
] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL,
Plant Mol Biol. 70:385-401(2009).
,
"Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"