miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041028
species: Phaseolus vulgaris
miRNA family: MIR482
source: miRBase, original name: pvu-MIR482 (MI0010702)

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTCCCAATTCCGCCCATTCC

miRNA*
 AATGGGCTGATTGGGAAGCAA

mismatches: 2
bulges: 1
View larger
pre-miRNA
 GGGATCCGGAGATTGGAGCAATCAGAATTTGTGGGAATGGGCTGATTGGGAAGCAATGTGTGCTGGTGCAATGCATTTAATTTCTTCCCAATTCCGCCCA
TTCCTATGATCTCTGATGATTCTTTCCTTTCCT

dot-bracket secondary structure
((((...((((...((((..((((((..(..(((((((((((.((((((((((.(((..((((.........))))...))).))))))))))..)))))
))))))..)..))))))..))))))))..))))


SIMILARITIES
miRBase gma-MIR482a: 2e-46

PMRD pvu-miR482: 1e-71

microPC miR482: 6e-37		UniProt no hits

RFAM no hits

Identical with: pvu-miR482 from PMRD (MNEST054383)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references
[1] Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL, Plant Mol Biol. 70:385-401(2009)., "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress"



Liczniki na strone;