ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR394
source: miRBase, original name: ghr-MIR394b (MI0013542)
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGCGGCCAGTATGTCAAAT mismatches: 3 bulges: 0 |
pre-miRNA
TAGGGGTTCTTAGAGGCTTTGTTGCAGAGCCAATTTGGCATTCTGTCCACCTCCATTGATGTACTTCTTCTTACCTACCCAACTTATAAAATGATTTGTC
TTTGAAGTAATGGAGGCGGCCAGTATGTCAAATAGACTCTGTAAATTTCTCTCTGAGAAACCCTA
dot-bracket secondary structure
(((((.((((((((((.....((((((((.(.(((((((((.(((.((.(((((((.....((((((.................................
...))))))))))))).)).))).))))))))).).)))))))).....)))))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
TAGGGGTTCTTAGAGGCTTTGTTGCAGAGCCAATTTGGCATTCTGTCCACCTCCATTGATGTACTTCTTCTTACCTACCCAACTTATAAAATGATTTGTC
TTTGAAGTAATGGAGGCGGCCAGTATGTCAAATAGACTCTGTAAATTTCTCTCTGAGAAACCCTA
dot-bracket secondary structure
(((((.((((((((((.....((((((((.(.(((((((((.(((.((.(((((((.....((((((.................................
...))))))))))))).)).))).))))))))).).)))))))).....)))))))))).)))))
SIMILARITIES| miRBase tcc-MIR394b: 0.000000000000009 PMRD ghr-miR394: 1e-47 microPC miR394: 6e-50 | UniProt no hits RFAM MIR394: 0.0000000000007 |
Identical with: miR394 from microPC (MNEST046325) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
