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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST041056
species: Gossypium hirsutum
miRNA family: MIR394
source: miRBase, original name: ghr-MIR394b (MI0013542)

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGCATTCTGTCCACCTCC

miRNA*
 AGGCGGCCAGTATGTCAAAT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TAGGGGTTCTTAGAGGCTTTGTTGCAGAGCCAATTTGGCATTCTGTCCACCTCCATTGATGTACTTCTTCTTACCTACCCAACTTATAAAATGATTTGTC
TTTGAAGTAATGGAGGCGGCCAGTATGTCAAATAGACTCTGTAAATTTCTCTCTGAGAAACCCTA

dot-bracket secondary structure
(((((.((((((((((.....((((((((.(.(((((((((.(((.((.(((((((.....((((((.................................
...))))))))))))).)).))).))))))))).).)))))))).....)))))))))).)))))


SIMILARITIES
miRBase tcc-MIR394b: 0.000000000000009

PMRD ghr-miR394: 1e-47

microPC miR394: 6e-50		UniProt no hits

RFAM MIR394: 0.0000000000007

Identical with: miR394 from microPC (MNEST046325)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"



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