ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR168
source: miRBase, original name: tcc-MIR168 (MI0017474)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
AGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGCTGCTCCTTAATAGTGGATTGGATTGGATTTAGGCCAGATGGCGGGCC
GTGACTGGAGGAGGCACGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAGGGGT
dot-bracket secondary structure
..((((((.(((((((..(((((.((((((((((.(((((.(..(((.(.((((.((((.......((((((......))))))((((........))))
......))))..))))).)))..).))))).)))))))))).)))))..))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
AGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGCTGCTCCTTAATAGTGGATTGGATTGGATTTAGGCCAGATGGCGGGCC
GTGACTGGAGGAGGCACGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAGGGGT
dot-bracket secondary structure
..((((((.(((((((..(((((.((((((((((.(((((.(..(((.(.((((.((((.......((((((......))))))((((........))))
......))))..))))).)))..).))))).)))))))))).)))))..))))))))))))).....
SIMILARITIES| miRBase crt-MIR168: 2e-22 PMRD rco-miR168: 3e-21 microPC miR168: 0.0000000001 | UniProt no hits RFAM MIR168: 5e-20 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
