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Species belonging to selected taxon:

Theobroma cacao



ABOUT THIS RECORD

ID: MNEST041101
species: Theobroma cacao
miRNA family: MIR168
source: miRBase, original name: tcc-MIR168 (MI0017474)

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA

miRNA*
CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0

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pre-miRNA
AGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTGGCTGCTGCTCCTTAATAGTGGATTGGATTGGATTTAGGCCAGATGGCGGGCC
GTGACTGGAGGAGGCACGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAGGGGT


dot-bracket secondary structure
..((((((.(((((((..(((((.((((((((((.(((((.(..(((.(.((((.((((.......((((((......))))))((((........))))
......))))..))))).)))..).))))).)))))))))).)))))..))))))))))))).....



SIMILARITIES
miRBase crt-MIR168: 2e-22

PMRD rco-miR168: 3e-21

microPC miR168: 0.0000000001
UniProt no hits

RFAM MIR168: 5e-20

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"




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