miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST041108
species:
Theobroma cacao
miRNA family:
MIR169_1
source:
miRBase, original name:
tcc-MIR169g
(
MI0017481
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAGCCAGGGATGACTTGCCTA
miRNA*
GGCAGTCACCTTGGCTATG
mismatches:
1
bulges:
2
View larger
pre-miRNA
GATAAAGAGTCTTTGTTTGG
TAGCCAGGGATGACTTGCCTA
CGGCTTTTCAGGTGGTTAATATTGATGCTATGATTATGAATGTAAAACCCCTGGCTCTG
GTCTGCA
GGCAGTCACCTTGGCTATG
CTAACAGGCTCTTTTCTC
dot-bracket secondary structure
((.(((((((((..(((..(
(((((((((.(((((.((((.
(((((..(((((.((((.(((((.(((.......))).)))))..)))))))))....)
).))).)
)))))))))))))))))).
..))))))))))))))..
SIMILARITIES
miRBase
ghb-MIR169a
:
0.000000007
PMRD
ghb-miR169a
:
0.000000007
microPC
no hits
UniProt
no hits
RFAM
MIR169_5: 0.0000000001
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"