ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR169_1
source: miRBase, original name: tcc-MIR169g (MI0017481)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAGGGATGACTTGCCTA miRNA* GGCAGTCACCTTGGCTATG mismatches: 1 bulges: 2 |
pre-miRNA
GATAAAGAGTCTTTGTTTGGTAGCCAGGGATGACTTGCCTACGGCTTTTCAGGTGGTTAATATTGATGCTATGATTATGAATGTAAAACCCCTGGCTCTG
GTCTGCAGGCAGTCACCTTGGCTATGCTAACAGGCTCTTTTCTC
dot-bracket secondary structure
((.(((((((((..(((..((((((((((.(((((.((((.(((((..(((((.((((.(((((.(((.......))).)))))..)))))))))....)
).))).)))))))))))))))))))...))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
GATAAAGAGTCTTTGTTTGGTAGCCAGGGATGACTTGCCTACGGCTTTTCAGGTGGTTAATATTGATGCTATGATTATGAATGTAAAACCCCTGGCTCTG
GTCTGCAGGCAGTCACCTTGGCTATGCTAACAGGCTCTTTTCTC
dot-bracket secondary structure
((.(((((((((..(((..((((((((((.(((((.((((.(((((..(((((.((((.(((((.(((.......))).)))))..)))))))))....)
).))).)))))))))))))))))))...))))))))))))))..
SIMILARITIES| miRBase ghb-MIR169a: 0.000000007 PMRD ghb-miR169a: 0.000000007 microPC no hits | UniProt no hits RFAM MIR169_5: 0.0000000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
