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ABOUT THIS RECORD
ID:
MNEST041136
species:
Theobroma cacao
miRNA family:
MIR395
source:
miRBase, original name:
tcc-MIR395a
(
MI0017509
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTGAAGTGTTTGGGGGAACTC
miRNA*
GTTCCCCTGACCACTTCACTA
mismatches:
4
bulges:
0
View larger
pre-miRNA
AGAGAGTCAGCTGTCCTCTGGA
GTTCCCCTGACCACTTCACTA
GAGGTTTCCTGGACCCTTAATAGGAAGAAACCTGACCTA
CTGAAGTGTTTGGGGGAA
CTC
CTGTTGGCACCTGACAATGT
dot-bracket secondary structure
.....(((((.((((..(.(((
(((((((..(.(((((((.((
((((((((......(((....)))..)))))))...)))
.))))))).)..))))))
)))
).)..)))).))))).....
SIMILARITIES
miRBase
vvi-MIR395m
:
0.000000006
PMRD
vvi-miR395m
:
0.000000006
microPC
miR395
:
0.00009
UniProt
no hits
RFAM
mir-395: 0.0000001
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"