ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR395
source: miRBase, original name: tcc-MIR395a (MI0017509)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGAAGTGTTTGGGGGAACTC miRNA* GTTCCCCTGACCACTTCACTA mismatches: 4 bulges: 0 |
pre-miRNA
AGAGAGTCAGCTGTCCTCTGGAGTTCCCCTGACCACTTCACTAGAGGTTTCCTGGACCCTTAATAGGAAGAAACCTGACCTACTGAAGTGTTTGGGGGAA
CTCCTGTTGGCACCTGACAATGT
dot-bracket secondary structure
.....(((((.((((..(.((((((((((..(.(((((((.((((((((((......(((....)))..)))))))...))).))))))).)..))))))
)))).)..)))).))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
AGAGAGTCAGCTGTCCTCTGGAGTTCCCCTGACCACTTCACTAGAGGTTTCCTGGACCCTTAATAGGAAGAAACCTGACCTACTGAAGTGTTTGGGGGAA
CTCCTGTTGGCACCTGACAATGT
dot-bracket secondary structure
.....(((((.((((..(.((((((((((..(.(((((((.((((((((((......(((....)))..)))))))...))).))))))).)..))))))
)))).)..)))).))))).....
SIMILARITIES| miRBase vvi-MIR395m: 0.000000006 PMRD vvi-miR395m: 0.000000006 microPC miR395: 0.00009 | UniProt no hits RFAM mir-395: 0.0000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
