ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR166
source: miRBase, original name: csi-MIR166a (MI0013315)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCCC miRNA* GGGAATGTTGTCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
GAAGCTTTTTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGCCACTAACTAGATCTTTGATTTAATCTCAGTTGATCATATATTTGTTTCATTTTTCTTCC
ATAAAATTTAATTATATTGAGATACCCATCATTGATCTTAAGATAATTAAGTTAGTGACGTCGGACCAGGCTTCATTCCCCCCAATAATTGCTTCTATCT
GC
dot-bracket secondary structure
(((((..((....(((.((((((((..((((((..(((.(.(((((((((((((..((((...((((((((((((..((.((((................
...)))).)))))).))))))))....))))..)))))...........)))))))).).)))..))))))..)))))))).))).))..))))).....
..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
GAAGCTTTTTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGCCACTAACTAGATCTTTGATTTAATCTCAGTTGATCATATATTTGTTTCATTTTTCTTCC
ATAAAATTTAATTATATTGAGATACCCATCATTGATCTTAAGATAATTAAGTTAGTGACGTCGGACCAGGCTTCATTCCCCCCAATAATTGCTTCTATCT
GC
dot-bracket secondary structure
(((((..((....(((.((((((((..((((((..(((.(.(((((((((((((..((((...((((((((((((..((.((((................
...)))).)))))).))))))))....))))..)))))...........)))))))).).)))..))))))..)))))))).))).))..))))).....
..
SIMILARITIES| miRBase ctr-MIR166: 2e-112 PMRD ptc-miR166a: 7e-16 microPC miR166: 7e-90 | UniProt no hits RFAM mir-166: 0.0000000000002 |
Identical with: miR166 from microPC (MNEST044795) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
