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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST041222
species: Citrus sinensis
miRNA family: MIR166
source: miRBase, original name: csi-MIR166a (MI0013315)

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCCC

miRNA*
 GGGAATGTTGTCTGGCTCGAGG

mismatches: 5
bulges: 0
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pre-miRNA
 GAAGCTTTTTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGCCACTAACTAGATCTTTGATTTAATCTCAGTTGATCATATATTTGTTTCATTTTTCTTCC
ATAAAATTTAATTATATTGAGATACCCATCATTGATCTTAAGATAATTAAGTTAGTGACGTCGGACCAGGCTTCATTCCCCCCAATAATTGCTTCTATCT
GC

dot-bracket secondary structure
(((((..((....(((.((((((((..((((((..(((.(.(((((((((((((..((((...((((((((((((..((.((((................
...)))).)))))).))))))))....))))..)))))...........)))))))).).)))..))))))..)))))))).))).))..))))).....
..


SIMILARITIES
miRBase ctr-MIR166: 2e-112

PMRD ptc-miR166a: 7e-16

microPC miR166: 7e-90		UniProt no hits

RFAM mir-166: 0.0000000000002

Identical with: miR166 from microPC (MNEST044795)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"



Liczniki na strone;