ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR394
source: miRBase, original name: csi-MIR394 (MI0016704)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGTGGGCATACTGCCAACT mismatches: 2 bulges: 0 |
pre-miRNA
CTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCGTTCCCCATCGATTGAATCTGAAAGCCTTTTTCTTTTCTTGTTTTTGTGCTTCTCTCTTTCATG
CTCATGGAGGTGGGCATACTGCCAACTGAGCTCTGTTGGCTTCTCTT
dot-bracket secondary structure
...((.((((((((((((((((.(.(((((((((((((....(((.((..((....(((.(((.....(.......).....).)))))..))..)))))
...))))))))))))).).)))))).)))))))))).))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
CTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCGTTCCCCATCGATTGAATCTGAAAGCCTTTTTCTTTTCTTGTTTTTGTGCTTCTCTCTTTCATG
CTCATGGAGGTGGGCATACTGCCAACTGAGCTCTGTTGGCTTCTCTT
dot-bracket secondary structure
...((.((((((((((((((((.(.(((((((((((((....(((.((..((....(((.(((.....(.......).....).)))))..))..)))))
...))))))))))))).).)))))).)))))))))).))........
SIMILARITIES| miRBase tcc-MIR394a: 3e-17 PMRD ptc-miRf10096-akr: 0.0000000000005 microPC miR394: 0.000007 | UniProt no hits RFAM MIR394: 0.000000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
