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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST041239
species: Citrus sinensis
miRNA family: MIR394
source: miRBase, original name: csi-MIR394 (MI0016704)

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGCATTCTGTCCACCTCC

miRNA*
 AGGTGGGCATACTGCCAACT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 CTTCTTACAGAGTTTATTGGCATTCTGTCCACCTCCGTTCCCCATCGATTGAATCTGAAAGCCTTTTTCTTTTCTTGTTTTTGTGCTTCTCTCTTTCATG
CTCATGGAGGTGGGCATACTGCCAACTGAGCTCTGTTGGCTTCTCTT

dot-bracket secondary structure
...((.((((((((((((((((.(.(((((((((((((....(((.((..((....(((.(((.....(.......).....).)))))..))..)))))
...))))))))))))).).)))))).)))))))))).))........


SIMILARITIES
miRBase tcc-MIR394a: 3e-17

PMRD ptc-miRf10096-akr: 0.0000000000005

microPC miR394: 0.000007		UniProt no hits

RFAM MIR394: 0.000000000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"



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