ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR398
source: miRBase, original name: csi-MIR398 (MI0013305)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGAGTGATCCTGAGAACAGAGG mismatches: 2 bulges: 1 |
pre-miRNA
CAACAGATGTGAAACCCCAGAGGAGTGATCCTGAGAACAGAGGGTGGCGTTGGCTTAAATTTGATTTGCATTGCTGCTGCCTGCTCCTGCCATACATTAA
ATCAAAAAGATTGTATGTGGCCAACGCACCTTGTGTTCTCAGGTCACCCCTTTGGGAATTCAATTGTCAATCAGCACGTGTCATCAAGTTACTCAATTGC
TCTAACATTCGCTGCTTCTGATTCA
dot-bracket secondary structure
...((((..((((..((((((((.((((.((((((((((.((((((.((((((((............(((..((....)).)))......((((((....
(((.....))))))))).)))))))))))))).)))))))))))))).))))))))..)))).........((((..((((.....(((.........))
)...))))..))))..)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
CAACAGATGTGAAACCCCAGAGGAGTGATCCTGAGAACAGAGGGTGGCGTTGGCTTAAATTTGATTTGCATTGCTGCTGCCTGCTCCTGCCATACATTAA
ATCAAAAAGATTGTATGTGGCCAACGCACCTTGTGTTCTCAGGTCACCCCTTTGGGAATTCAATTGTCAATCAGCACGTGTCATCAAGTTACTCAATTGC
TCTAACATTCGCTGCTTCTGATTCA
dot-bracket secondary structure
...((((..((((..((((((((.((((.((((((((((.((((((.((((((((............(((..((....)).)))......((((((....
(((.....))))))))).)))))))))))))).)))))))))))))).))))))))..)))).........((((..((((.....(((.........))
)...))))..))))..)))).....
SIMILARITIES| miRBase gra-MIR398: 0.00000005 PMRD vvi-miR398a: 0.0000002 microPC miR398: 3e-71 | UniProt no hits RFAM MIR398: 0.00000001 |
Identical with: miR398 from microPC (MNEST046491) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"
