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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST041245
species: Citrus sinensis
miRNA family: MIR398
source: miRBase, original name: csi-MIR398 (MI0013305)

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCTT

miRNA*
 GGAGTGATCCTGAGAACAGAGG

mismatches: 2
bulges: 1
View larger
pre-miRNA
 CAACAGATGTGAAACCCCAGAGGAGTGATCCTGAGAACAGAGGGTGGCGTTGGCTTAAATTTGATTTGCATTGCTGCTGCCTGCTCCTGCCATACATTAA
ATCAAAAAGATTGTATGTGGCCAACGCACCTTGTGTTCTCAGGTCACCCCTTTGGGAATTCAATTGTCAATCAGCACGTGTCATCAAGTTACTCAATTGC
TCTAACATTCGCTGCTTCTGATTCA

dot-bracket secondary structure
...((((..((((..((((((((.((((.((((((((((.((((((.((((((((............(((..((....)).)))......((((((....
(((.....))))))))).)))))))))))))).)))))))))))))).))))))))..)))).........((((..((((.....(((.........))
)...))))..))))..)))).....


SIMILARITIES
miRBase gra-MIR398: 0.00000005

PMRD vvi-miR398a: 0.0000002

microPC miR398: 3e-71		UniProt no hits

RFAM MIR398: 0.00000001

Identical with: miR398 from microPC (MNEST046491)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern

references
[1] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"



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