ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR399
source: miRBase, original name: csi-MIR399a (MI0016712)
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCGG miRNA* TGCATGCAGTTGCATATTACAGGGCAACATCTCCATTGGCAGG mismatches: 2 bulges: 1 |
pre-miRNA
CATTGAGGTGCATGCATGCAGTTGCATATTACAGGGCAACATCTCCATTGGCAGGCTGCATACTTATTACATCCATCTCATATATACGTATGTTCTTCAG
TCAGTGTGCCTTCTGCCAAAGGAGATTTGCCCGGCAATTCCTCTGCATTTATTTT
dot-bracket secondary structure
....(((((((.((((......)))).......((((((.((((((.((((((((..(((((((.(((..........(((((....)))))......))
).)))))))..)))))))).)))))))))))).)))...))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
CATTGAGGTGCATGCATGCAGTTGCATATTACAGGGCAACATCTCCATTGGCAGGCTGCATACTTATTACATCCATCTCATATATACGTATGTTCTTCAG
TCAGTGTGCCTTCTGCCAAAGGAGATTTGCCCGGCAATTCCTCTGCATTTATTTT
dot-bracket secondary structure
....(((((((.((((......)))).......((((((.((((((.((((((((..(((((((.(((..........(((((....)))))......))
).)))))))..)))))))).)))))))))))).)))...))))............
SIMILARITIES| miRBase tcc-MIR399d: 0.0000000000005 PMRD vvi-miR399e: 0.000000000002 microPC miR399: 0.000008 | UniProt no hits RFAM mir-399: 0.00000000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
