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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST041246
species: Citrus sinensis
miRNA family: MIR399
source: miRBase, original name: csi-MIR399a (MI0016712)

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGATTTGCCCGG

miRNA*
 TGCATGCAGTTGCATATTACAGGGCAACATCTCCATTGGCAGG

mismatches: 2
bulges: 1
View larger
pre-miRNA
 CATTGAGGTGCATGCATGCAGTTGCATATTACAGGGCAACATCTCCATTGGCAGGCTGCATACTTATTACATCCATCTCATATATACGTATGTTCTTCAG
TCAGTGTGCCTTCTGCCAAAGGAGATTTGCCCGGCAATTCCTCTGCATTTATTTT

dot-bracket secondary structure
....(((((((.((((......)))).......((((((.((((((.((((((((..(((((((.(((..........(((((....)))))......))
).)))))))..)))))))).)))))))))))).)))...))))............


SIMILARITIES
miRBase tcc-MIR399d: 0.0000000000005

PMRD vvi-miR399e: 0.000000000002

microPC miR399: 0.000008		UniProt no hits

RFAM mir-399: 0.00000000001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"



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