ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR395
source: miRBase, original name: sly-MIR395b (MI0008370)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGAAGTGTTTGGGGGAACTCC miRNA* AGTTCCCTTGACCACTTCATGA mismatches: 5 bulges: 0 |
pre-miRNA
TTAAGGTGTTCCCTAGAGTTCCCTTGACCACTTCATGAGGGCTTACTTTGATGTTAGAAGCGTTGCTGAAGTGTTTGGGGGAACTCCTGGGTTGACTTTA
A
dot-bracket secondary structure
.((((((...(((..(((((((((..(.(((((((..((.((((.((........)))))).))..))))))).)..)))))))))..)))...))))))
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
[2] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
TTAAGGTGTTCCCTAGAGTTCCCTTGACCACTTCATGAGGGCTTACTTTGATGTTAGAAGCGTTGCTGAAGTGTTTGGGGGAACTCCTGGGTTGACTTTA
A
dot-bracket secondary structure
.((((((...(((..(((((((((..(.(((((((..((.((((.((........)))))).))..))))))).)..)))))))))..)))...))))))
.
SIMILARITIES| miRBase sly-MIR395a: 4e-22 PMRD sly-miR395b: 1e-52 microPC miR395: 0.00008 | UniProt no hits RFAM mir-395: 2e-45 |
Identical with: sly-miR395b from PMRD (MNEST054559) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
[2] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
