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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum pennellii
ABOUT THIS RECORD
ID:
MNEST041546
species:
Solanum lycopersicum
miRNA family:
MIR395
source:
miRBase, original name:
sly-MIR395b
(
MI0008370
)
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTGAAGTGTTTGGGGGAACTCC
miRNA*
AGTTCCCTTGACCACTTCATGA
mismatches:
5
bulges:
0
View larger
pre-miRNA
TTAAGGTGTTCCCTAG
AGTTCCCTTGACCACTTCATGA
GGGCTTACTTTGATGTTAGAAGCGTTG
CTGAAGTGTTTGGGGGAACTCC
TGGGTTGACTTTA
A
dot-bracket secondary structure
.((((((...(((..(
((((((((..(.(((((((..(
(.((((.((........)))))).)).
.))))))).)..))))))))).
.)))...))))))
.
SIMILARITIES
miRBase
sly-MIR395a
:
4e-22
PMRD
sly-miR395b
:
1e-52
microPC
miR395
:
0.00008
UniProt
no hits
RFAM
mir-395: 2e-45
Identical with:
sly-miR395b
from PMRD (
MNEST054559
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
references
[
1
] Zhang J, Zeng R, Chen J, Liu X, Liao Q,
Gene. 423:1-7(2008).
,
"Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
[
2
] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T,
Genome Res. 18:1602-1609(2008).
,
"Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"