ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR167
source: miRBase, original name: bdi-MIR167b (MI0018091)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GGTCATGCTGCGGCAGCCTCACT mismatches: 1 bulges: 2 |
pre-miRNA
GTGCTACTTACTTACTGCCCGAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCAGCGTGATCAAGCAAGATTCACACATACACGTGTGGTTTTTTTG
AGCTATAGCTCGATTGATCTTGAGGTCATGCCTTGCTAGGTCATGCTGCGGCAGCCTCACTTCTTCCCGCCGTTTGGGCATGCACAGCTG
dot-bracket secondary structure
((((...........((((((((((((.((((((.(((((((((((((((((((...((((((((...((((((((((((......)))))......(((
(((....))))))..))))))).))))))))...)))))))))))))..)))))).)))))).))))).....))))))).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GTGCTACTTACTTACTGCCCGAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCAGCGTGATCAAGCAAGATTCACACATACACGTGTGGTTTTTTTG
AGCTATAGCTCGATTGATCTTGAGGTCATGCCTTGCTAGGTCATGCTGCGGCAGCCTCACTTCTTCCCGCCGTTTGGGCATGCACAGCTG
dot-bracket secondary structure
((((...........((((((((((((.((((((.(((((((((((((((((((...((((((((...((((((((((((......)))))......(((
(((....))))))..))))))).))))))))...)))))))))))))..)))))).)))))).))))).....))))))).)))).....
SIMILARITIES| miRBase osa-MIR167c: 5e-20 PMRD osa-miR167c: 5e-20 microPC miR167: 0.000002 | UniProt no hits RFAM MIR167_1: 8e-19 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
