miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041750
species: Brachypodium distachyon
miRNA family: MIR167
source: miRBase, original name: bdi-MIR167b (MI0018091)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTA

miRNA*
 GGTCATGCTGCGGCAGCCTCACT

mismatches: 1
bulges: 2
View larger
pre-miRNA
 GTGCTACTTACTTACTGCCCGAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCAGCGTGATCAAGCAAGATTCACACATACACGTGTGGTTTTTTTG
AGCTATAGCTCGATTGATCTTGAGGTCATGCCTTGCTAGGTCATGCTGCGGCAGCCTCACTTCTTCCCGCCGTTTGGGCATGCACAGCTG

dot-bracket secondary structure
((((...........((((((((((((.((((((.(((((((((((((((((((...((((((((...((((((((((((......)))))......(((
(((....))))))..))))))).))))))))...)))))))))))))..)))))).)))))).))))).....))))))).)))).....


SIMILARITIES
miRBase osa-MIR167c: 5e-20

PMRD osa-miR167c: 5e-20

microPC miR167: 0.000002		UniProt no hits

RFAM MIR167_1: 8e-19

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence

references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"



Liczniki na strone;