ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR167_1
source: miRBase, original name: bdi-MIR167c (MI0018095)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTGA miRNA* AGATCATGCTGTGCAGTTTCATC mismatches: 1 bulges: 1 |
pre-miRNA
TTCACTTGCTGTGGTGCATCTTCTAGGAGCTGAAGCTGCCAGCATGATCTGACGAGAGTTCCTCGTCTGATAGCAATGTTTAATTCTCTTGTCATGACTA
ATGATCAGATCATGCTGTGCAGTTTCATCTGCTTGTGGATGCACAAGATACTGTTCATA
dot-bracket secondary structure
..(((.....)))((((((((...((.((.(((((((((((((((((((((..(((((((...(((.((....)))))...)))))))..(((((.....
))))))))))))))))).))))))))).)).))...))))))))...............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
TTCACTTGCTGTGGTGCATCTTCTAGGAGCTGAAGCTGCCAGCATGATCTGACGAGAGTTCCTCGTCTGATAGCAATGTTTAATTCTCTTGTCATGACTA
ATGATCAGATCATGCTGTGCAGTTTCATCTGCTTGTGGATGCACAAGATACTGTTCATA
dot-bracket secondary structure
..(((.....)))((((((((...((.((.(((((((((((((((((((((..(((((((...(((.((....)))))...)))))))..(((((.....
))))))))))))))))).))))))))).)).))...))))))))...............
SIMILARITIES| miRBase sbi-MIR167d: 0.000000000000002 PMRD sbi-miR167d: 0.000000000000002 microPC miR167: 0.00003 | UniProt no hits RFAM MIR167_1: 0.000000000003 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
