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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041751
species: Brachypodium distachyon
miRNA family: MIR167_1
source: miRBase, original name: bdi-MIR167c (MI0018095)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTGA

miRNA*
 AGATCATGCTGTGCAGTTTCATC

mismatches: 1
bulges: 1
View larger
pre-miRNA
 TTCACTTGCTGTGGTGCATCTTCTAGGAGCTGAAGCTGCCAGCATGATCTGACGAGAGTTCCTCGTCTGATAGCAATGTTTAATTCTCTTGTCATGACTA
ATGATCAGATCATGCTGTGCAGTTTCATCTGCTTGTGGATGCACAAGATACTGTTCATA

dot-bracket secondary structure
..(((.....)))((((((((...((.((.(((((((((((((((((((((..(((((((...(((.((....)))))...)))))))..(((((.....
))))))))))))))))).))))))))).)).))...))))))))...............


SIMILARITIES
miRBase sbi-MIR167d: 0.000000000000002

PMRD sbi-miR167d: 0.000000000000002

microPC miR167: 0.00003		UniProt no hits

RFAM MIR167_1: 0.000000000003

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"



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