ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR171
source: miRBase, original name: bdi-MIR171b (MI0018084)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCACGGTTCAATCAAA mismatches: 0 bulges: 0 |
pre-miRNA
CCAAGGATTACTATACTGGCTGGGAGAGTGCGATGTTGGCACGGTTCAATCAAATCGGGTGGTCTCTGCATGCACTGGCTTGCGAGCAAGCTGCGATGAT
GTTTCGCTCCATCTGATTGAGCCGTGCCAATATCGCAAGCTTCTTTGCCTAGCAACCTGTACCG
dot-bracket secondary structure
...(((.((.(((....(((.(((((..((((((((((((((((((((((((.((.((((((......((((((...(((((....)))))))).)))..
...)))))).)).))))))))))))))))))))))))..)))))..)))))).)))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
CCAAGGATTACTATACTGGCTGGGAGAGTGCGATGTTGGCACGGTTCAATCAAATCGGGTGGTCTCTGCATGCACTGGCTTGCGAGCAAGCTGCGATGAT
GTTTCGCTCCATCTGATTGAGCCGTGCCAATATCGCAAGCTTCTTTGCCTAGCAACCTGTACCG
dot-bracket secondary structure
...(((.((.(((....(((.(((((..((((((((((((((((((((((((.((.((((((......((((((...(((((....)))))))).)))..
...)))))).)).))))))))))))))))))))))))..)))))..)))))).)))))......
SIMILARITIES| miRBase zma-MIR171i: 0.00000000000004 PMRD zma-miR171i: 0.00000000000004 microPC miR171: 0.000002 | UniProt no hits RFAM MIR171_1: 0.00000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
