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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041765
species: Brachypodium distachyon
miRNA family: MIR171
source: miRBase, original name: bdi-MIR171b (MI0018084)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGTGCCAATATC

miRNA*
 TGTTGGCACGGTTCAATCAAA

mismatches: 0
bulges: 0
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pre-miRNA
 CCAAGGATTACTATACTGGCTGGGAGAGTGCGATGTTGGCACGGTTCAATCAAATCGGGTGGTCTCTGCATGCACTGGCTTGCGAGCAAGCTGCGATGAT
GTTTCGCTCCATCTGATTGAGCCGTGCCAATATCGCAAGCTTCTTTGCCTAGCAACCTGTACCG

dot-bracket secondary structure
...(((.((.(((....(((.(((((..((((((((((((((((((((((((.((.((((((......((((((...(((((....)))))))).)))..
...)))))).)).))))))))))))))))))))))))..)))))..)))))).)))))......


SIMILARITIES
miRBase zma-MIR171i: 0.00000000000004

PMRD zma-miR171i: 0.00000000000004

microPC miR171: 0.000002		UniProt no hits

RFAM MIR171_1: 0.00000001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence

references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"



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