ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR396
source: miRBase, original name: bdi-MIR396d (MI0018096)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* ACTTAGCTTATGCTTAACTGCAAGAGTGCTGTTCAATAAAGCTGTGGGAAA mismatches: 2 bulges: 0 |
pre-miRNA
TATTGGATGCATGCATGGCCCTCTTTGCTATCTTCCACAGCTTTCTTGAACTGCATCTGCAATGGATGCTACTTAGCTTATGCTTAACTGCAAGAGTGCT
GTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAATTGGGCAGCTTAAT
dot-bracket secondary structure
........((.(((.((((.((((((((.((.((((((((((((.((((((.((((((.....))))))......((((.(((......))).))))...
)))))).)))))))))))).)).)))))))).).))).....))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
TATTGGATGCATGCATGGCCCTCTTTGCTATCTTCCACAGCTTTCTTGAACTGCATCTGCAATGGATGCTACTTAGCTTATGCTTAACTGCAAGAGTGCT
GTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAATTGGGCAGCTTAAT
dot-bracket secondary structure
........((.(((.((((.((((((((.((.((((((((((((.((((((.((((((.....))))))......((((.(((......))).))))...
)))))).)))))))))))).)).)))))))).).))).....))))).....
SIMILARITIES| miRBase sbi-MIR396a: 0.00000000000003 PMRD sbi-miR396a: 0.00000000000003 microPC miR396: 0.00000003 | UniProt no hits RFAM MIR396: 0.000000009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
