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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041794
species: Brachypodium distachyon
miRNA family: MIR396
source: miRBase, original name: bdi-MIR396d (MI0018096)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTG

miRNA*
 ACTTAGCTTATGCTTAACTGCAAGAGTGCTGTTCAATAAAGCTGTGGGAAA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TATTGGATGCATGCATGGCCCTCTTTGCTATCTTCCACAGCTTTCTTGAACTGCATCTGCAATGGATGCTACTTAGCTTATGCTTAACTGCAAGAGTGCT
GTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACCAATTGGGCAGCTTAAT

dot-bracket secondary structure
........((.(((.((((.((((((((.((.((((((((((((.((((((.((((((.....))))))......((((.(((......))).))))...
)))))).)))))))))))).)).)))))))).).))).....))))).....


SIMILARITIES
miRBase sbi-MIR396a: 0.00000000000003

PMRD sbi-miR396a: 0.00000000000003

microPC miR396: 0.00000003		UniProt no hits

RFAM MIR396: 0.000000009

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"



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