ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR1122
source: miRBase, original name: bdi-MIR1135 (MI0011576)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCGACAAGTAATTCCGACCGGA miRNA* CGACCGGTATTACTTGTCTCAAAT mismatches: 7 bulges: 0 |
pre-miRNA
AGGAGCATAATTAGTACTTCCTCCGACCGGTATTACTTGTCTCAAATTTGCCCAAATACGGATGTATCTATGTGTAAAACGTGTCTAGATACATGTAATA
TTTCGACAAGTAATTCCGACCGGAGGGAGTGCCATAAT
dot-bracket secondary structure
.............((((((((((((..(((.((((((((((....((((....))))..(.(((((((((.(..(.....)..).))))))))).)....
....)))))))))).)))..))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
AGGAGCATAATTAGTACTTCCTCCGACCGGTATTACTTGTCTCAAATTTGCCCAAATACGGATGTATCTATGTGTAAAACGTGTCTAGATACATGTAATA
TTTCGACAAGTAATTCCGACCGGAGGGAGTGCCATAAT
dot-bracket secondary structure
.............((((((((((((..(((.((((((((((....((((....))))..(.(((((((((.(..(.....)..).))))))))).)....
....)))))))))).)))..))))))))))))......
SIMILARITIES| miRBase bdi-MIR1122: 1e-19 PMRD bdi-miR1135: 2e-74 microPC miR1128: 0.000007 | UniProt no hits RFAM MIR1122: 1e-47 |
Identical with: bdi-miR1135 from PMRD (MNEST048322) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
