miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041811
species: Brachypodium distachyon
miRNA family: MIR1122
source: miRBase, original name: bdi-MIR1135 (MI0011576)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTCGACAAGTAATTCCGACCGGA

miRNA*
 CGACCGGTATTACTTGTCTCAAAT

mismatches: 7
bulges: 0
View larger
pre-miRNA
 AGGAGCATAATTAGTACTTCCTCCGACCGGTATTACTTGTCTCAAATTTGCCCAAATACGGATGTATCTATGTGTAAAACGTGTCTAGATACATGTAATA
TTTCGACAAGTAATTCCGACCGGAGGGAGTGCCATAAT

dot-bracket secondary structure
.............((((((((((((..(((.((((((((((....((((....))))..(.(((((((((.(..(.....)..).))))))))).)....
....)))))))))).)))..))))))))))))......


SIMILARITIES
miRBase bdi-MIR1122: 1e-19

PMRD bdi-miR1135: 2e-74

microPC miR1128: 0.000007		UniProt no hits

RFAM MIR1122: 1e-47

Identical with: bdi-miR1135 from PMRD (MNEST048322)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"



Liczniki na strone;