ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR1139
source: miRBase, original name: bdi-MIR1139 (MI0011562)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGTAACATACACTAGTAACA miRNA* ATATTAAAGTAGTAACATAT mismatches: 8 bulges: 1 |
pre-miRNA
TCCTCTGATTGGACTATTATTTGTTCGCACTATCACGAGGCTTGAGGCTGGTCACAGTGGCGAGTAACATACACTAGTAACATGCATATATTAAAGTAGT
AACATATAAGTCTCATTTAT
dot-bracket secondary structure
.(((((((((((((........)))))....)))).))))..(((((((.(((.....)))..((.((.(((..(((((.........)))))..)))))
.)).....))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
TCCTCTGATTGGACTATTATTTGTTCGCACTATCACGAGGCTTGAGGCTGGTCACAGTGGCGAGTAACATACACTAGTAACATGCATATATTAAAGTAGT
AACATATAAGTCTCATTTAT
dot-bracket secondary structure
.(((((((((((((........)))))....)))).))))..(((((((.(((.....)))..((.((.(((..(((((.........)))))..)))))
.)).....))))))).....
SIMILARITIES| miRBase tae-MIR1139: 0.00000002 PMRD bdi-miR1139: 8e-64 microPC no hits | UniProt no hits RFAM no hits |
Identical with: bdi-miR1139 from PMRD (MNEST048323) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
