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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041812
species: Brachypodium distachyon
miRNA family: MIR1139
source: miRBase, original name: bdi-MIR1139 (MI0011562)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAGTAACATACACTAGTAACA

miRNA*
 ATATTAAAGTAGTAACATAT

mismatches: 8
bulges: 1
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pre-miRNA
 TCCTCTGATTGGACTATTATTTGTTCGCACTATCACGAGGCTTGAGGCTGGTCACAGTGGCGAGTAACATACACTAGTAACATGCATATATTAAAGTAGT
AACATATAAGTCTCATTTAT

dot-bracket secondary structure
.(((((((((((((........)))))....)))).))))..(((((((.(((.....)))..((.((.(((..(((((.........)))))..)))))
.)).....))))))).....


SIMILARITIES
miRBase tae-MIR1139: 0.00000002

PMRD bdi-miR1139: 8e-64

microPC no hits		UniProt no hits

RFAM no hits

Identical with: bdi-miR1139 from PMRD (MNEST048323)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
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references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"



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