ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR156
source: miRBase, original name: far-MIR156a (MI0016609)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCACA miRNA* TGAGACACC mismatches: 17 bulges: 0 |
pre-miRNA
GCAGACCGATGGTCGTGGCTGGCACCGTGGGTGGTGGTATCCCATGGCTGAGTTGACAGAAGAGAGAGAGCACAGCTGGAGTCGGTGGCGACCCCTGTGA
GACACCCGCCTGGAGGGAGCTCTGGACCGGGGAAGCCGTGGCTGCCATATGCATGTGGGCCATAACCCGTGTGAGGACGC
dot-bracket secondary structure
.((.((....(((..(((((.(((..(((.((((..(....((((((((.....................(((((..((.((((....))))))))))).
....((((.(..(((....)))..)..))))..)))))))))..)))).))).))).)))))..))).)).)).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
GCAGACCGATGGTCGTGGCTGGCACCGTGGGTGGTGGTATCCCATGGCTGAGTTGACAGAAGAGAGAGAGCACAGCTGGAGTCGGTGGCGACCCCTGTGA
GACACCCGCCTGGAGGGAGCTCTGGACCGGGGAAGCCGTGGCTGCCATATGCATGTGGGCCATAACCCGTGTGAGGACGC
dot-bracket secondary structure
.((.((....(((..(((((.(((..(((.((((..(....((((((((.....................(((((..((.((((....))))))))))).
....((((.(..(((....)))..)..))))..)))))))))..)))).))).))).)))))..))).)).)).......
SIMILARITIES| miRBase far-MIR156b: 2e-99 PMRD bdi-miR156: 4e-20 microPC miR157: 0.00004 | UniProt sp|Q7EXZ2|SPL14_ORYSJ: 0.000000000000005 RFAM mir-156: 0.0007 |
Identical with: far-MIR156b from miRBase (MNEST041867) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
