miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041866
species: Festuca arundinacea
miRNA family: MIR156
source: miRBase, original name: far-MIR156a (MI0016609)

Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGAGAGCACA

miRNA*
 TGAGACACC

mismatches: 17
bulges: 0
View larger
pre-miRNA
 GCAGACCGATGGTCGTGGCTGGCACCGTGGGTGGTGGTATCCCATGGCTGAGTTGACAGAAGAGAGAGAGCACAGCTGGAGTCGGTGGCGACCCCTGTGA
GACACCCGCCTGGAGGGAGCTCTGGACCGGGGAAGCCGTGGCTGCCATATGCATGTGGGCCATAACCCGTGTGAGGACGC

dot-bracket secondary structure
.((.((....(((..(((((.(((..(((.((((..(....((((((((.....................(((((..((.((((....))))))))))).
....((((.(..(((....)))..)..))))..)))))))))..)))).))).))).)))))..))).)).)).......


SIMILARITIES
miRBase far-MIR156b: 2e-99

PMRD bdi-miR156: 4e-20

microPC miR157: 0.00004		UniProt sp|Q7EXZ2|SPL14_ORYSJ: 0.000000000000005

RFAM mir-156: 0.0007

Identical with: far-MIR156b from miRBase (MNEST041867)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record

references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"



Liczniki na strone;