ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR169
source: miRBase, original name: far-MIR169 (MI0016612)
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCACCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
GGCACGAGGGCAAAGCCTTACATGGCTGCAAGGGCCTTACCTCTGATAGCCAAGGATGACTTGCCTATGTCTTCTTCCTCCCTCAGATGCCTAATTAGCC
TTGGAGGTGTGGGGTCTCATGGGCAGTCACCTTGGCTAGCCTGAGTGGCT
dot-bracket secondary structure
(.(((..((((..((((......)))).((..((.....))..)).(((((((((.(((((.(((((((.((((..(((((....((.((.......)).
)))))))...))))...)))))))))))))))))))))))))..))).).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
GGCACGAGGGCAAAGCCTTACATGGCTGCAAGGGCCTTACCTCTGATAGCCAAGGATGACTTGCCTATGTCTTCTTCCTCCCTCAGATGCCTAATTAGCC
TTGGAGGTGTGGGGTCTCATGGGCAGTCACCTTGGCTAGCCTGAGTGGCT
dot-bracket secondary structure
(.(((..((((..((((......)))).((..((.....))..)).(((((((((.(((((.(((((((.((((..(((((....((.((.......)).
)))))))...))))...)))))))))))))))))))))))))..))).).
SIMILARITIES| miRBase bdi-MIR169g: 9e-18 PMRD zma-miR169d: 0.000000000002 microPC miR169: 5e-47 | UniProt no hits RFAM MIR169_5: 0.0000000006 |
Identical with: miR169 from microPC (MNEST045660) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"
